Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs147539297 chr19:29322378 C/CT 3.48E-11 119 46.23 40.05 12.63 KM Plot
THYM rs147646679 chr4:70049842 G/A 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs1476615 chr7:45318349 A/C 2.6E-5 118 50.07 35 14.9 KM Plot
THYM rs147691672 chr7:76130832 G/C 2.94E-5 117 40.67 45.87 28.43 KM Plot
THYM rs147730268 chr12:123024476 G/T 1.28E-12 116 41.22 35 6 KM Plot
THYM rs147850297 chr20:29508009 C/T 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs147904247 chr20:29532490 CCTGGTTCAAA/C 2.08E-13 119 37.63 50.53 6 KM Plot
THYM rs147917920 chr1:227476699 AAAT/A 1.34E-5 116 42.9 37.13 19.63 KM Plot
THYM rs1480395 chr8:50222531 G/A 6.06E-10 119 46.43 50.1 26.52 KM Plot
THYM rs148049399 chr9:97116955 G/A 8.53E-5 118 41.77 42.73 17.03 KM Plot
THYM rs1481184 chr4:12523573 A/C 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs148122781 chr4:70078965 T/A 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs148265496 chr4:70074725 A/T 7.68E-13 117 40.67 35 6 KM Plot
THYM rs148293079 chr1:227464092 G/A 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs148492942 chr1:243302427 A/G 5.5E-5 119 42.9 26.2 27.37 KM Plot